15 Best Ever Cottage Cheese Muffin Recipes!

ByViolet Parker

Cottage cheese has definitely been having a moment in 2024, and thanks to some viral posts on TikTok, food lovers have been cooking up a huge variety of treats using this healthy, high protein ingredient, from cottage cheese ice cream to cottage cheese desserts! But one of my favorite discoveries this year has been cottage cheese muffin recipes. They’re healthier and higher in protein than traditional muffins, and they’re such a good choice for an easy and delicious breakfast. That’s exactly why I’ve created this guide, with my favorite ideas! From simple chocolate chip cottage cheese muffins to fruity peach cottage cheese muffins, I hope you love these recipes as much as I do…

1. Chocolate Chip Cottage Cheese Muffins

chocolate chip cottage cheese muffins

These Chocolate Chip Cottage Cheese Muffins are a lighter take on a classic favorite. By incorporating cottage cheese, you reduce the need for heavy fats while adding protein and moisture. The result is a soft, satisfying muffin with just the right amount of chocolate! 

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup melted coconut oil
  • 1/3 cup coconut sugar or sweetener of choice
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1/2 cup dark chocolate chips

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, whisk together the cottage cheese, eggs, melted coconut oil, coconut sugar, and vanilla extract until smooth.
  3. In a separate bowl, combine the whole wheat flour, baking powder, baking soda, and salt.
  4. Gradually add the dry ingredients to the wet ingredients, mixing until just combined.
  5. Fold in the dark chocolate chips.
  6. Divide the batter evenly among the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Let cool on a wire rack before serving.

2. Strawberry Cottage Cheese Muffins

strawberry cottage cheese muffins

These Strawberry Cottage Cheese Muffins are a fresh, fruity option that’s lighter on sugar but big on flavor. The cottage cheese provides a creamy texture and adds protein, making these muffins a great way to start your day.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup olive oil
  • 1/3 cup honey or maple syrup
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1 cup diced fresh strawberries

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, mix together the cottage cheese, eggs, olive oil, honey, and vanilla extract until smooth.
  3. In another bowl, whisk together the whole wheat flour, baking powder, baking soda, and salt.
  4. Gradually add the dry ingredients to the wet ingredients, mixing until just combined.
  5. Gently fold in the diced strawberries.
  6. Spoon the batter into the muffin cups, filling each about 2/3 full.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Allow to cool slightly before serving.

3. Banana Cottage Cheese Muffins

banana cottage cheese muffins

These Banana Cottage Cheese Muffins are a healthier alternative to traditional banana muffins. By using ripe bananas for natural sweetness and cottage cheese for added protein, these muffins are moist and flavorful without excess sugar. My kid loves these in her lunchbox for school! 

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large ripe bananas, mashed
  • 2 large eggs
  • 1/4 cup melted coconut oil
  • 1/3 cup coconut sugar or sweetener of choice
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, combine the cottage cheese, mashed bananas, eggs, melted coconut oil, coconut sugar, and vanilla extract.
  3. In another bowl, whisk together the whole wheat flour, baking powder, baking soda, and salt.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Divide the batter evenly among the muffin cups.
  6. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  7. Cool slightly before serving.

4. Pumpkin Spice Cottage Cheese Muffins

pumpkin spice cottage cheese muffins

These Pumpkin Spice Cottage Cheese Muffins are perfect for fall, offering all the warm flavors of pumpkin spice in a healthier package! The cottage cheese keeps them moist, while the spices and pumpkin puree add depth without needing excess sugar.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 1 cup pumpkin puree
  • 2 large eggs
  • 1/4 cup coconut oil
  • 1/3 cup maple syrup
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/2 tsp cinnamon
  • 1/4 tsp nutmeg
  • 1/4 tsp ground ginger
  • 1/4 tsp salt

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, mix together the cottage cheese, pumpkin puree, eggs, coconut oil, maple syrup, and vanilla extract.
  3. In a separate bowl, combine the whole wheat flour, baking powder, baking soda, cinnamon, nutmeg, ground ginger, and salt.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Spoon the batter into the muffin cups.
  6. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  7. Let the muffins cool on a wire rack before serving.

5. Blueberry and Chocolate Cottage Cheese Muffins

blueberry and chocolate cottage cheese muffins

These Blueberry and Chocolate Cottage Cheese Muffins are a delightful mix of tart blueberries and rich dark chocolate. They’re made healthier by using whole grains and a moderate amount of sweetener, while the cottage cheese adds protein and moisture.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup olive oil
  • 1/3 cup honey or maple syrup
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1/2 cup fresh or frozen blueberries
  • 1/2 cup dark chocolate chips

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, whisk together the cottage cheese, eggs, olive oil, honey, and vanilla extract until smooth.
  3. In a separate bowl, combine the whole wheat flour, baking powder, baking soda, and salt.
  4. Gradually add the dry ingredients to the wet ingredients, mixing until just combined.
  5. Gently fold in the blueberries and dark chocolate chips.
  6. Divide the batter evenly among the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Allow to cool before serving.

6. Peach Cottage Cheese Muffins

peach cottage cheese muffins

These Peach Cottage Cheese Muffins are a light and fruity option, perfect for a healthy breakfast or snack. The cottage cheese adds creaminess and protein, while the peaches provide natural sweetness and a juicy texture.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup olive oil
  • 1/3 cup honey or maple syrup
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1 cup diced fresh or canned peaches (drained)

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, mix together the cottage cheese, eggs, olive oil, honey, and vanilla extract until smooth.
  3. In another bowl, whisk together the whole wheat flour, baking powder, baking soda, and salt.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Gently fold in the diced peaches.
  6. Spoon the batter into the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Let the muffins cool on a wire rack before serving.

7. Carrot and Raisin Cottage Cheese Muffins

carrot and raisin cottage cheese muffins

These Carrot and Raisin Cottage Cheese Muffins are a healthier twist on a classic, packed with fiber-rich carrots and sweet raisins. So good for breakfast! 

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup melted coconut oil
  • 1/3 cup coconut sugar or sweetener of choice
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1 tsp cinnamon
  • 1/4 tsp ground ginger
  • 1/4 tsp salt
  • 1 cup grated carrots
  • 1/2 cup raisins

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, combine the cottage cheese, eggs, melted coconut oil, coconut sugar, and vanilla extract.
  3. In another bowl, whisk together the whole wheat flour, baking powder, baking soda, cinnamon, ground ginger, and salt.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Fold in the grated carrots and raisins.
  6. Divide the batter evenly among the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Cool slightly before serving.

8. Lemon Poppy Seed Cottage Cheese Muffins

lemon and poppy seed cottage cheese muffins

These Lemon Poppy Seed Cottage Cheese Muffins are bright, zesty, and perfect for a morning pick-me-up. 

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup olive oil
  • 1/3 cup honey or maple syrup
  • 1/4 cup fresh lemon juice
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1 tbsp poppy seeds
  • Zest of 1 lemon

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, whisk together the cottage cheese, eggs, olive oil, honey, lemon juice, and vanilla extract until smooth.
  3. In another bowl, combine the whole wheat flour, baking powder, baking soda, salt, poppy seeds, and lemon zest.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Spoon the batter into the muffin cups.
  6. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  7. Let the muffins cool on a wire rack before serving.

9. Coconut and Pineapple Cottage Cheese Muffins

coconut and pineapple cottage cheese muffins

These Coconut and Pineapple Cottage Cheese Muffins bring tropical flavors to your kitchen, offering a sweet and refreshing treat! The combination of cottage cheese, coconut, and pineapple makes these muffins moist and flavorful without the need for excessive sugar.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup coconut oil, melted
  • 1/3 cup honey or maple syrup
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1/2 cup shredded unsweetened coconut
  • 1 cup crushed pineapple, drained

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, mix together the cottage cheese, eggs, melted coconut oil, honey, and vanilla extract until smooth.
  3. In another bowl, whisk together the whole wheat flour, baking powder, baking soda, salt, and shredded coconut.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Gently fold in the crushed pineapple.
  6. Spoon the batter into the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Allow to cool slightly before serving.

10. Cranberry Orange Cottage Cheese Muffins

cranberry orange cottage cheese muffins

These Cranberry Orange Cottage Cheese Muffins are bursting with tart cranberries and zesty orange flavor. The cottage cheese keeps them moist and adds a healthy dose of protein, making them a perfect breakfast option.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup olive oil
  • 1/3 cup honey or maple syrup
  • 1/4 cup fresh orange juice
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1 cup fresh or frozen cranberries
  • Zest of 1 orange

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, whisk together the cottage cheese, eggs, olive oil, honey, orange juice, and vanilla extract until smooth.
  3. In another bowl, combine the whole wheat flour, baking powder, baking soda, salt, and orange zest.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Gently fold in the cranberries.
  6. Spoon the batter into the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Let the muffins cool on a wire rack before serving.

11. Triple Berry Bliss Cottage Cheese Muffins

berry bliss cottage cheese muffins

These Triple Berry Bliss Cottage Cheese Muffins are packed with a medley of fresh berries, making them a delicious and antioxidant-rich treat. The cottage cheese adds a creamy texture while keeping the muffins light and healthy.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup melted coconut oil
  • 1/3 cup honey or maple syrup
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1/2 cup fresh or frozen strawberries, chopped
  • 1/2 cup fresh or frozen blueberries
  • 1/2 cup fresh or frozen raspberries

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, mix together the cottage cheese, eggs, melted coconut oil, honey, and vanilla extract until smooth.
  3. In another bowl, whisk together the whole wheat flour, baking powder, baking soda, and salt.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Gently fold in the berries.
  6. Spoon the batter into the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Allow to cool slightly before serving.

12. Cherry Almond Cottage Cheese Muffins

cherry almond cottage cheese muffins

These Cherry Almond Cottage Cheese Muffins combine the tartness of cherries with the nuttiness of almonds for a deliciously balanced treat.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup olive oil
  • 1/3 cup honey or maple syrup
  • 1 tsp almond extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1/2 cup chopped fresh or frozen cherries
  • 1/4 cup sliced almonds

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, whisk together the cottage cheese, eggs, olive oil, honey, and almond extract until smooth.
  3. In another bowl, combine the whole wheat flour, baking powder, baking soda, and salt.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Gently fold in the chopped cherries and sliced almonds.
  6. Spoon the batter into the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Let the muffins cool on a wire rack before serving.

13. Raspberry and White Chocolate Cottage Cheese Muffins

raspberry and white chocolate cottage cheese muffins

These Raspberry and White Chocolate Cottage Cheese Muffins offer a delightful combination of tart raspberries and sweet white chocolate.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup coconut oil, melted
  • 1/3 cup honey or maple syrup
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1/2 cup fresh or frozen raspberries
  • 1/2 cup white chocolate chips

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, mix together the cottage cheese, eggs, melted coconut oil, honey, and vanilla extract until smooth.
  3. In another bowl, whisk together the whole wheat flour, baking powder, baking soda, and salt.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Gently fold in the raspberries and white chocolate chips.
  6. Spoon the batter into the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Allow to cool slightly before serving.

14. Peanut Butter and Jelly Cottage Cheese Muffins

peanut butter and jelly cottage cheese muffins

These Peanut Butter and Jelly Cottage Cheese Muffins are a fun, nostalgic treat that’s perfect for breakfast or a snack. 

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup peanut butter, melted
  • 1/3 cup honey or maple syrup
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1/4 cup sugar-free or low-sugar jelly or jam

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, whisk together the cottage cheese, eggs, melted peanut butter, honey, and vanilla extract until smooth.
  3. In another bowl, combine the whole wheat flour, baking powder, baking soda, and salt.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Fill the muffin cups halfway with batter, then add a small dollop of jelly or jam in the center.
  6. Top with more batter to cover the jelly.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Let the muffins cool on a wire rack before serving.

15. Cherry Chocolate Chip Cottage Cheese Muffins

cherry chocolate chip cottage cheese muffins

These Cherry Chocolate Chip Cottage Cheese Muffins combine the rich flavors of dark chocolate and sweet cherries for a decadent yet healthier treat.

Serves: 12

Ingredients:

  • 1 cup low-fat cottage cheese
  • 2 large eggs
  • 1/4 cup olive oil
  • 1/3 cup honey or maple syrup
  • 1 tsp vanilla extract
  • 1 1/2 cups whole wheat flour
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 1/2 cup fresh or frozen cherries, chopped
  • 1/2 cup dark chocolate chips

Instructions:

  1. Preheat the oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a large bowl, whisk together the cottage cheese, eggs, olive oil, honey, and vanilla extract until smooth.
  3. In another bowl, combine the whole wheat flour, baking powder, baking soda, and salt.
  4. Add the dry ingredients to the wet ingredients and mix until just combined.
  5. Gently fold in the chopped cherries and dark chocolate chips.
  6. Spoon the batter into the muffin cups.
  7. Bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean.
  8. Allow to cool slightly before serving.

These 15 cottage cheese muffin recipes offer a healthier twist on traditional muffins by reducing sugar, incorporating whole grains, and adding protein. Whether you’re looking for a quick breakfast, a healthy snack, or a light dessert, these muffins are delicious, satisfying, and guilt-free. Enjoy, and be sure to leave a comment below with your favorite!